dnase-seq and histone modification chip-seq data Search Results


dnase-seq  (Epigenomics ag)
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dna enrichment assay  (STARR Life Sciences)
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dnase seq libraries  (New England Biolabs)
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starr-seq  (STARR Life Sciences)
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chip-seq  (Epigenomics ag)
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chromatin mark chip-seq tracks  (Epigenomics ag)
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epigenomic data lad  (Epigenomics ag)
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Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for <t>DNase</t> accessibility against lamina associated domain <t>(LAD)</t> enrichment (top-left) and transcription against heterochromatin histone marks based on <t>chromHMM</t> labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.
Epigenomic Data Lad, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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chip-seq data  (Epigenomics ag)
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Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for <t>DNase</t> accessibility against lamina associated domain <t>(LAD)</t> enrichment (top-left) and transcription against heterochromatin histone marks based on <t>chromHMM</t> labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.
Chip Seq Data, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rna-seq data  (Epigenomics ag)
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Epigenomics ag rna-seq data
Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for <t>DNase</t> accessibility against lamina associated domain <t>(LAD)</t> enrichment (top-left) and transcription against heterochromatin histone marks based on <t>chromHMM</t> labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.
Rna Seq Data, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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chip-seq and dnase-seq experiments  (Epigenomics ag)
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Epigenomics ag chip-seq and dnase-seq experiments
Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for <t>DNase</t> accessibility against lamina associated domain <t>(LAD)</t> enrichment (top-left) and transcription against heterochromatin histone marks based on <t>chromHMM</t> labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.
Chip Seq And Dnase Seq Experiments, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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atac-seq  (Epigenomics ag)
90
Epigenomics ag atac-seq
Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for <t>DNase</t> accessibility against lamina associated domain <t>(LAD)</t> enrichment (top-left) and transcription against heterochromatin histone marks based on <t>chromHMM</t> labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.
Atac Seq, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for DNase accessibility against lamina associated domain (LAD) enrichment (top-left) and transcription against heterochromatin histone marks based on chromHMM labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.

Journal: Nucleic Acids Research

Article Title: BHi-Cect: a top-down algorithm for identifying the multi-scale hierarchical structure of chromosomes

doi: 10.1093/nar/gkaa004

Figure Lengend Snippet: Loci nestedness is coupled with epigenomic activity We plot here the epigenomic feature enrichment for each locus as a function of their BPT nestedness. The trends for DNase accessibility against lamina associated domain (LAD) enrichment (top-left) and transcription against heterochromatin histone marks based on chromHMM labels enrichment (bottom-left)are shown. The trends for RNAP II and CTCF enrichment are shown independently (right column). The trend lines were obtained using b-spline smoothing with 4 degrees of freedom and the shaded areas mark the corresponding 95% confidence intervals.

Article Snippet: All epigenomic data (ChIP, RNA-seq, CAGE, LAD, DNase, ChromHMM) for all cell lines were downloaded from the NIH Roadmap Epigenomics Mapping Consortium database website ( ) and ENCODE project website ( ).

Techniques: Activity Assay